Stem-loop sequence eca-mir-149

Accession MI0012725
Description Equus caballus miR-149 stem-loop
Gene family MIPF0000274; mir-149
Stem-loop 
g     -    a   u u g      g     a     -gug  u 
 ccggc gccc ggc c g cuccgu ucuuc cuccc    ug g
 ||||| |||| ||| | | |||||| ||||| |||||    ||  
 ggccg cggg ucg g c ggggca ggagg gaggg    gc u
a     u    g   u u g      g     -     agga  c
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Genome context
Coordinates (EquCab2) Overlapping transcripts
6: 25975930-25976018 [+]
sense
ENSECAT00000014952 ; LOC100147336; intron 2
ENSECAT00000014952 ; F6ZR41_HORSE; intron 2
ENSECAT00000014952 ; F6ZR41_HORSE; intron 2
Database links
  • ENTREZGENE: 100314817;MIR149

Mature sequence eca-miR-149

Accession MIMAT0012973
Sequence

15 -  

ucuggcuccgugucuucacuccc

 - 37

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Evidence not experimental

References

1
PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).