Stem-loop sequence eca-mir-16-1

Accession

MI0012707 (change log)

Previous IDs

eca-mir-16

Description

Equus caballus miR-16 stem-loop

Gene family

MIPF0000006; mir-15

Literature search

2 open access papers mention eca-mir-16-1
(3 sentences)

Stem-loop

     uc    cu         ua        c  ag   aau 
5' gu  cgcu  agcagcacg  aauauugg gu  uga   a
   ||  ||||  |||||||||  |||||||| ||  |||    
3' cg  gcga  ucgucgugu  uuauaacc ca  auu   a
     gu    uu         ua        a  -a   aua 

Deep sequencing

25171 reads, 1.75e+03 reads per million, 2 experiments

Confidence

Annotation confidence: undefined

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (EquCab2.0; GCF_000002305.2): chr5: 15685330-15685410 [+]
• Overlapping transcripts:

  sense

  ENSECAT00000024113 ; SMC4-201; intron 3

Clustered miRNAs

< 10kb from eca-mir-16-1

• eca-mir-15b: chr5: 15685189-15685252 [+]
• eca-mir-16-1: chr5: 15685330-15685410 [+]

Database links

• EntrezGene:MIR16
• miRBase Tracker:MI0012707

Mature sequence eca-miR-16

• Accession: MIMAT0012955
• Sequence: 10 - uagcagcacguaaauauuggcg - 31
• Deep sequencing: 50285 reads, 1 experiments
• Evidence: not experimental

References

1. PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).