Stem-loop sequence eca-mir-16-1

AccessionMI0012707 (change log)
Previous IDseca-mir-16
DescriptionEquus caballus miR-16 stem-loop
Gene family MIPF0000006; mir-15
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-16_microRNA_precursor_family. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

The miR-16 microRNA precursor family is a group of related small non-coding RNA genes that regulates gene expression. miR-16, miR-15, mir-195 and miR-457 are related microRNA precursor sequences from the mir-15 gene family. This microRNA family appears to be vertebrate specific and its members have been predicted or experimentally validated in a wide range of vertebrate species (MIPF0000006).

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     uc    cu         ua        c  ag   aau 
5' gu  cgcu  agcagcacg  aauauugg gu  uga   a
   ||  ||||  |||||||||  |||||||| ||  |||    
3' cg  gcga  ucgucgugu  uuauaacc ca  auu   a
     gu    uu         ua        a  -a   aua 
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Genome context
Coordinates (EquCab2.0; GCF_000002305.2) Overlapping transcripts
chr5: 15685330-15685410 [+]
ENSECAT00000024113 ; SMC4-201; intron 3
Clustered miRNAs
< 10kb from eca-mir-16-1
eca-mir-15bchr5: 15685189-15685252 [+]
eca-mir-16-1chr5: 15685330-15685410 [+]
Database links

Mature sequence eca-miR-16

Accession MIMAT0012955

10 - 


 - 31

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Evidence not experimental


PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).