Stem-loop sequence rno-mir-665

Accession MI0012606
Description Rattus norvegicus miR-665 stem-loop
Gene family MIPF0000404; mir-665
Stem-loop 
--agaaca     u   -           u      aucca  a    cu 
        ggguc ccu ugaggggccuc gccucu     gg uuau  u
        ||||| ||| ||||||||||| ||||||     || ||||   
        uccgg gga auucccuggag cggagg     cc agua  u
ucucauuc     c   c           u      ----a  -    uu
Get sequence
Genome context
Coordinates (RGSC3.4) Overlapping transcripts
6: 134177288-134177381 [+]
intergenic
Clustered miRNAs
< 10kb from rno-mir-665
rno-mir-493 6: 134170340-134170423 [+]
rno-mir-337 6: 134176751-134176847 [+]
rno-mir-3544 6: 134176763-134176850 [-]
rno-mir-540 6: 134177033-134177116 [+]
rno-mir-665 6: 134177288-134177381 [+]
rno-mir-431 6: 134182307-134182420 [+]
rno-mir-433 6: 134183216-134183308 [+]
rno-mir-127 6: 134184312-134184408 [+]
rno-mir-3543 6: 134186227-134186341 [-]
rno-mir-434 6: 134186260-134186340 [+]
rno-mir-136 6: 134186977-134187058 [+]
Database links
  • ENTREZGENE: 100314180;Mir665

Mature sequence rno-miR-665

Accession MIMAT0012844
Sequence

55 -  

accaggaggcugaggucccuua

 - 76

Get sequence
Evidence experimental; SOLiD [2]
Predicted targets

References

1
PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).