Stem-loop sequence rno-mir-653

Accession MI0012600
Description Rattus norvegicus miR-653 stem-loop
Gene family MIPF0000435; mir-653
Stem-loop 
-    uu  -     u     u       uu     c     caagcu 
 auuu  ca uucuu cagug ugaaaca  cucua ugaac      c
 ||||  || ||||| ||||| |||||||  ||||| |||||      c
 ugaa  gu aagaa guuau acuuugu  ggggu acuug      a
a    uc  u     c     c       uu     c     aacaaa
Get sequence
Genome context
Coordinates (RGSC3.4) Overlapping transcripts
4: 28517619-28517715 [-]
sense
ENSRNOT00000065274 ; CALCR_RAT; intron 2
ENSRNOT00000065274 ; CALCR_RAT; intron 2
ENSRNOT00000065274 ; CALCR_RAT; intron 2
ENSRNOT00000013910 ; Calcr; intron 4
ENSRNOT00000013910 ; Calcr; intron 4
ENSRNOT00000013910 ; Calcr; intron 4
Clustered miRNAs
< 10kb from rno-mir-653
rno-mir-489 4: 28518260-28518365 [-]
rno-mir-653 4: 28517619-28517715 [-]
Database links
  • ENTREZGENE: 100314179;Mir653

Mature sequence rno-miR-653-5p

Accession MIMAT0012838
Previous IDs rno-miR-653
Sequence

20 -  

uugaaacauucucuacugaac

 - 40

Get sequence
Evidence experimental; SOLiD [2]
Predicted targets

Mature sequence rno-miR-653-3p

Accession MIMAT0017361
Previous IDs rno-miR-653*
Sequence

57 -  

uucacugggguuuguuucacua

 - 78

Get sequence
Evidence experimental; SOLiD [2]
Predicted targets

References

1
PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).