Stem-loop sequence mdo-mir-146b

Accession

MI0012503 (change log)

Description

Monodelphis domestica miR-146b stem-loop

Gene family

MIPF0000103; mir-146

Stem-loop

   cugg    g        a    a    cu  ga  u 
5'     cucu agaacuga uucc uagg  gu  gc c
       |||| |||||||| |||| ||||  ||  ||  
3'     gagg ucuugacu aagg aucc  ua  cg a
   ----    -        g    -    cg  aa  u 

Deep sequencing

151038 reads, 2.38e+03 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (MonDom5; GCF_000002295.2): chr1: 109630336-109630403 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir146b
• miRBase Tracker:MI0012503

Mature sequence mdo-miR-146b-5p

• Accession: MIMAT0012747
• Sequence: 8 - ugagaacugaauuccauaggcu - 29
• Deep sequencing: 150765 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000061B694_13616
• Predicted targets:
  • TargetScanVert:mdo-miR-146b-5p

Mature sequence mdo-miR-146b-3p

• Accession: MIMAT0026939
• Sequence: 48 - ccuaggaagucaguucugga - 67
• Deep sequencing: 273 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:mdo-miR-146b-3p

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).