Stem-loop sequence bmo-mir-2778c

Accession MI0012339
Description Bombyx mori miR-2778c stem-loop
Gene family MIPF0000827; mir-2778
Stem-loop 
--    g     --gu        a  uc    ac  uuu 
  cacg caaaa    uuuuuugc ua  cugc  ag   c
  |||| |||||    |||||||| ||  ||||  ||    
  gugc guuuu    aaaaaacg au  gacg  uc   a
ga    a     aacu        c  ga    -c  uug
Get sequence
Deep sequencing
1302 reads, 3 experiments
Genome context
Coordinates (SILKDB2.0) Overlapping transcripts
nscaf2800: 2275442-2275518 [+]
intergenic
Clustered miRNAs
< 10kb from bmo-mir-2778c
bmo-mir-2778a-1 nscaf2800: 2274853-2274929 [+]
bmo-mir-2778c nscaf2800: 2275442-2275518 [+]
bmo-mir-2778a-3 nscaf2800: 2275593-2275669 [+]

Mature sequence bmo-miR-2778c-5p

Accession MIMAT0013666
Previous IDs bmo-miR-2778c
Sequence

11 -  

guuuuuuugcauauccugca

 - 30

Get sequence
Deep sequencing 1261 reads, 3 experiments
Evidence experimental; Solexa [1]

Mature sequence bmo-miR-2778c-3p

Accession MIMAT0013667
Previous IDs bmo-miR-2778c*
Sequence

46 -  

cagaguacgcaaaaaaucaauu

 - 67

Get sequence
Deep sequencing 41 reads, 3 experiments
Evidence experimental; Solexa [1]

References

1
PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).