Stem-loop sequence bmo-mir-2733c

Accession MI0012306
Description Bombyx mori miR-2733c stem-loop
Stem-loop 
g          u    ug     a  g      u   uguc 
 auugucacug cagu  ucacu uc ccagug cag    g
 |||||||||| ||||  ||||| || |||||| |||     
 uagcaguggc guua  aguga ag ggucac guc    u
-          c    gu     g  -      u   uuaa
Get sequence
Deep sequencing
28 reads, 3 experiments
Genome context
Coordinates (SILKDB2.0) Overlapping transcripts
nscaf2176: 352194-352275 [-]
intergenic
Clustered miRNAs
< 10kb from bmo-mir-2733c
bmo-mir-9d nscaf2176: 353029-353113 [-]
bmo-mir-2733c nscaf2176: 352194-352275 [-]
bmo-mir-2733g nscaf2176: 346317-346428 [-]
bmo-mir-2733a-1 nscaf2176: 346147-346230 [-]
bmo-mir-2851-1 nscaf2176: 346140-346238 [+]
bmo-mir-2733b-2 nscaf2176: 345690-345818 [-]
bmo-mir-2733h nscaf2176: 345532-345612 [-]
bmo-mir-2733b-1 nscaf2176: 345409-345488 [-]
bmo-mir-2733a-3 nscaf2176: 345068-345215 [-]
bmo-mir-2851-2 nscaf2176: 345032-345130 [+]
bmo-mir-2733a-2 nscaf2176: 344959-345075 [-]
bmo-mir-2733f nscaf2176: 344550-344667 [-]
bmo-mir-2733i nscaf2176: 343361-343468 [-]

Mature sequence bmo-miR-2733c

Accession MIMAT0013619
Sequence

51 -  

ucacugggagagugaugauugc

 - 72

Get sequence
Deep sequencing 28 reads, 3 experiments
Evidence experimental; Solexa [1], SOLID [2]

References

1
PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).
2
PMID:20229201 "Novel microRNAs in silkworm (Bombyx mori)" Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J Funct Integr Genomics. 10:405-415(2010).