Stem-loop sequence bmo-mir-2733e-1

Accession MI0012304
Description Bombyx mori miR-2733e-1 stem-loop
Gene family MIPF0000766; mir-2733
Stem-loop 
acugucuacaacaaugucucucaac         c  -    u    c    ---   u 
                         aauaguuau ac uucc cagu gaca   ugu u
                         ||||||||| || |||| |||| ||||   |||  
                         uuaucgaua ug aagg guca cugu   aca u
----------------agauagguc         a  u    -    -    cuu   c
Get sequence
Deep sequencing
3 reads, 2 experiments
Genome context
Coordinates (SILKDB2.0) Overlapping transcripts
nscaf2176: 341366-341463 [-]
intergenic
Clustered miRNAs
< 10kb from bmo-mir-2733e-1
bmo-mir-2733g nscaf2176: 346317-346428 [-]
bmo-mir-2733a-1 nscaf2176: 346147-346230 [-]
bmo-mir-2851-1 nscaf2176: 346140-346238 [+]
bmo-mir-2733b-2 nscaf2176: 345690-345818 [-]
bmo-mir-2733h nscaf2176: 345532-345612 [-]
bmo-mir-2733b-1 nscaf2176: 345409-345488 [-]
bmo-mir-2733a-3 nscaf2176: 345068-345215 [-]
bmo-mir-2851-2 nscaf2176: 345032-345130 [+]
bmo-mir-2733a-2 nscaf2176: 344959-345075 [-]
bmo-mir-2733f nscaf2176: 344550-344667 [-]
bmo-mir-2733i nscaf2176: 343361-343468 [-]
bmo-mir-2733e-1 nscaf2176: 341366-341463 [-]
bmo-mir-2733e-2 nscaf2176: 341036-341134 [-]

Mature sequence bmo-miR-2733e

Accession MIMAT0013617
Sequence

67 -  

ucacugggaauguaauagcuau

 - 88

Get sequence
Deep sequencing 10 reads, 2 experiments
Evidence experimental; Solexa [1-2]

References

1
PMID:20199675 "MicroRNAs of Bombyx mori identified by Solexa sequencing" Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q BMC Genomics. 11:148(2010).
2
PMID:20089182 "Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development" Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R BMC Genomics. 11:52(2010).