Stem-loop sequence isc-mir-12

Accession

MI0012264 (change log)

Description

Ixodes scapularis miR-12 stem-loop

Gene family

MIPF0000181; mir-12

Literature search

1 open access papers mention isc-mir-12
(1 sentences)

Stem-loop

   ---gaucgc        u   ac           u           -  g u 
5'          guuggggc ggg  ugaguauuaca cagguacuggu cu g u
            |||||||| |||  ||||||||||| ||||||||||| || |  
3'          cggccccg ucc  acuuauagugu gucuaugacca gg u g
   gcgucaaau        c   cc           -           u  g c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Iscaw1): DS942119: 45739-45839 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from isc-mir-12

• isc-mir-5307: DS942119: 46308-46417 [-]
• isc-mir-12: DS942119: 45739-45839 [-]

Database links

• miRBase Tracker:MI0012264

Mature sequence isc-miR-12

• Accession: MIMAT0012684
• Sequence: 21 - ugaguauuacaucagguacuggu - 43
• Evidence: not experimental

References

1. PMID:19196333 "The deep evolution of metazoan microRNAs" Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ Evol Dev. 11:50-68(2009).