Stem-loop sequence dpu-mir-124

Accession MI0012220
Description Daphnia pulex miR-124 stem-loop
Gene family MIPF0000021; mir-124
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-124_microRNA_precursor_family. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

The miR-124 microRNA precursor is a small non-coding RNA molecule that has been identified in flies (MI0000373), nematode worms (MI0000302), mouse (MI0000150) and human (MI0000443). The mature ~21 nucleotide microRNAs are processed from hairpin precursor sequences by the Dicer enzyme, and in this case originates from the 3' arm. miR-124 has been found to be the most abundant microRNA expressed in neuronal cells. Experiments to alter expression of miR-124 in neural cells did not appear to affect differentiation.

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Stem-loop
-----aagacacaca     ccuc           u       u  u   auu a 
               guucu    guguucauugu gugccuu ug auu   g a
               |||||    ||||||||||| ||||||| || |||   |  
               cgaga    cguaaguggcg cacggaa ac uag   c u
gcuuacaacccggca     --ac           -       u  -   --g u 
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Genome context
Coordinates (JGI1.0) Overlapping transcripts
scaffold_120: 76880-76980 [+]
intergenic

Mature sequence dpu-miR-124

Accession MIMAT0012639
Sequence

61 - 

uaaggcacgcggugaaugccaag

 - 83

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Evidence not experimental

References

1
PMID:19196333 "The deep evolution of metazoan microRNAs" Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ Evol Dev. 11:50-68(2009).