Stem-loop sequence bmo-mir-2731-1

Accession MI0012179
Previous IDs bmo-mir-2731a
Description Bombyx mori miR-2731-1 stem-loop
Gene family MIPF0000795; mir-2731
Stem-loop 
aa    -aac     c a  c --a    au      --         a 
  accu    agaug g ga c   uggu  guggaa  auaaaagcc c
  ||||    ||||| | || |   ||||  ||||||  |||||||||  
  ugga    ucuac c cu g   acca  caccuu  uauuuuugg c
-g    gccc     a -  a aaa    --      uc         c
Get sequence
Deep sequencing
181 reads, 3 experiments
Genome context
Coordinates (SILKDB2.0) Overlapping transcripts
nscaf2952: 70974-71064 [-]
intergenic
Clustered miRNAs
< 10kb from bmo-mir-2731-1
bmo-mir-2731-2 nscaf2952: 72108-72198 [-]
bmo-mir-2731-1 nscaf2952: 70974-71064 [-]

Mature sequence bmo-miR-2731

Accession MIMAT0012608
Previous IDs bmo-miR-2731a
Sequence

13 -  

ugcgagaccaugguaugugga

 - 33

Get sequence
Deep sequencing 244 reads, 3 experiments
Evidence experimental; cloned [1], RT-PCR [1]

References

1
PMID:19699294 "A discovery of novel microRNAs in the silkworm (Bombyx mori) genome" Yu X, Zhou Q, Cai Y, Luo Q, Lin H, Hu S, Yu J Genomics. 94:438-444(2009).