Stem-loop sequence cte-mir-2686a

Accession

MI0012120

Description

Capitella teleta miR-2686a stem-loop

Gene family

MIPF0000927; mir-2686

Stem-loop

ga -         -ua         c   u     a   uuu 
  c cgauuugag   ccuauauug gaa caucu ucc   c
  | |||||||||   ||||||||| ||| ||||| |||   a
  g gcugaauuc   ggauguaac cuu guaga agg   a
-a c         uuc         u   -     -   cua 

Deep sequencing

333 reads, 1 experiments

Genome context

• Coordinates (JGI1.0): scaffold_174: 220624-220705 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from cte-mir-2686a

• cte-mir-2686c: scaffold_174: 220473-220557 [+]
• cte-mir-2686a: scaffold_174: 220624-220705 [+]
• cte-mir-2686b: scaffold_174: 220799-220870 [+]

Mature sequence cte-miR-2686a-5p

• Accession: MIMAT0013535
• Previous IDs: cte-miR-2686a*
• Sequence: 14 - accuauauugcgaaucaucuauc - 36
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; 454 [1]

Mature sequence cte-miR-2686a-3p

• Accession: MIMAT0013536
• Previous IDs: cte-miR-2686a
• Sequence: 49 - aagauguucucaauguaggcuu - 70
• Deep sequencing: 332 reads, 1 experiments
• Evidence: experimental; 454 [1]

References

1. PMID:19755470 "MicroRNAs resolve an apparent conflict between annelid systematics and their fossil record" Sperling EA, Vinther J, Moy VN, Wheeler BM, Semon M, Briggs DE, Peterson KJ Proc Biol Sci. 276:4315-4322(2009).