Stem-loop sequence mtr-MIR2671i

Accession

MI0012038

Description

Medicago truncatula miR2671i stem-loop

Gene family

MIPF0000813; MIR2655

Stem-loop

-                                   c    c a            g      c              g                     a    -                            c       a       -guu            c   acucuaauac 
 ucguuuugguuccuuaacuauuaaaaguuucguuu gguc c uaacuuauuuuu gguuuu uuuuggucccuuaa uauuagaaguuucguuuuggu ccuu aacuuauuuuuugguuucguuuuggucc uuaacuu uuuuuug    ucguuuuggucc uua          a
 ||||||||||||||||||||||||||||||||||| |||| | |||||||||||| |||||| |||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||| |||||||    |||||||||||| |||          u
 agcaaaaccagggaauugauaauuuucaaagcaaa ccag g auugaaugaaaa ccaaag aaaaccagggaauu auaauuuucaaagcaaaacca ggaa uugaaugaaaaaccaaagcaaaaccagg aauugag aggaagc    ggugaaaucagg aau          u
a                                   a    a a            a      c              g                     -    a                            -       a       aguu            a   acaauccuac 

Genome context

• Coordinates (Mt3.0): MtChr8: 4196114-4196471 [-]
• Overlapping transcripts:

  intergenic

Mature sequence mtr-miR2671i

• Accession: MIMAT0013491
• Sequence: 21 - uuaaaaguuucguuucggucc - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).