Stem-loop sequence mtr-MIR2630s

Accession

MI0011938 (change log)

Description

Medicago truncatula miR2630s stem-loop

Gene family

MIPF0000814; MIR2630

Literature search

2 open access papers mention mtr-MIR2630s
(2 sentences)

Stem-loop

   -                u   u                a          a            cau        aaaa       cua      ----------uc          -  a 
5'  cccugcaaauauagaa auu gguuuugguccuuggu uuuuguuuua uccuuguaaaau   uucauauu    uuggucc   uaauau            auuuuaguuc uc u
    |||||||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||||   ||||||||    |||||||   ||||||            |||||||||| || u
3'  gggacguuuauauuuu uaa ccaaaaccaggaacca aaaacaaaau aggaacauuuua   aaguauaa    aaccagg   auuaua            uaaaaucagg ag u
   a                u   c                c          c            acu        gcua       aac      caucuuauaaau          g  u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr7: 31925699-31925927 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011938

Mature sequence mtr-miR2630s

• Accession: MIMAT0013391
• Sequence: 21 - ugguuuugguccuugguauuu - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).