Stem-loop sequence mtr-MIR2630p

Accession

MI0011935 (change log)

Description

Medicago truncatula miR2630p stem-loop

Gene family

MIPF0000814; MIR2630

Literature search

2 open access papers mention mtr-MIR2630p
(2 sentences)

Stem-loop

   -  cu            u          -    c                a            cauu        aaa       cuauaauauucauuuuaguccucauuuuga 
5'  cc  gcaaauauagaa auuugguuuu gguc uugguauuuuguuuua uccuuguaaaau    ucauauug   uuggucc                              g
    ||  |||||||||||| |||||||||| |||| |||||||||||||||| ||||||||||||    ||||||||   |||||||                               
3'  gg  cguuuauauuuu uaaaccaaaa ccag aaccauaaaacaaaau aggaacauuuua    aguauaac   aaccagg                              g
   a  uu            u          a    u                c            accu        cua       aacauuauacaucuuauaaaauaaaaucag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr4: 4799279-4799508 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011935

Mature sequence mtr-miR2630p

• Accession: MIMAT0013388
• Sequence: 21 - ugguuuugguccuugguauuu - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).