Stem-loop sequence mtr-MIR2630o

Accession

MI0011934 (change log)

Description

Medicago truncatula miR2630o stem-loop

Gene family

MIPF0000814; MIR2630

Literature search

2 open access papers mention mtr-MIR2630o
(2 sentences)

Stem-loop

   c               u                               a     a      cau         aaa       cua      ----------uc          -  a 
5'  ccugcaaauauagaa auuugguuuugguccuugguauuuuguuuua uccuu uaaaau   uucauauug   uuggucc   uaauau            auuuuagucc uc u
    ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||   |||||||||   |||||||   ||||||            |||||||||| || u
3'  ggacguuuauauuuu uaaaccaaaacuaggaacuauaaaacaaaau aggaa auuuua   aaguauaac   aaccagg   auuaua            uaaaaucagg ag u
   a               u                               c     c      auu         cua       aac      caucuuauaaac          g  u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr5: 6240185-6240412 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011934

Mature sequence mtr-miR2630o

• Accession: MIMAT0013387
• Sequence: 21 - ugguuuugguccuugguauuu - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).