Stem-loop sequence mtr-MIR2630k

Accession

MI0011930 (change log)

Description

Medicago truncatula miR2630k stem-loop

Gene family

MIPF0000814; MIR2630

Literature search

2 open access papers mention mtr-MIR2630k
(2 sentences)

Stem-loop

   -  c             u                               a  c         cau         aaa       cua      ----------uc          -  a 
5'  cc ugcaaauauaaaa auuugguuuugguccuugguauuuuguuuua uc uuguaaaau   uucauauug   uuggucc   uaauau            auuuuagucc uc u
    || ||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||   |||||||||   |||||||   ||||||            |||||||||| || u
3'  gg auguuuauauuuu uaaacuaaaaccaggagccauaaaacaaaau ag aacauuuua   aaguauaac   aaccagg   auuaua            uaaaaucagg ag u
   a  a             u                               c  a         acu         cua       aac      caucuuauaaac          g  u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr4: 9694217-9694445 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0011930

Mature sequence mtr-miR2630k

• Accession: MIMAT0013383
• Sequence: 21 - ugguuuugguccuugguauuu - 41
• Evidence: experimental; 454 [1]

References

1. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).