Stem-loop sequence mtr-MIR2592j

Accession MI0011821
Description Medicago truncatula miR2592j stem-loop
Gene family MIPF0000815; MIR2592
Stem-loop 
a         c  ca                         c  a            uc     a      a           gag   u c         u      c     ccaccgaa ug   uu 
 aauucaaac ug  aaacaacaggacucaagcauuucgc aa caccucauguuu  ccuuu aaaaua uaaauuuuugu   gcu g uuuagauga gguauu aagug        u  agg  c
 ||||||||| ||  ||||||||||||||||||||||||| || ||||||||||||  ||||| |||||| |||||||||||   ||| | ||||||||| |||||| |||||        |  |||   
 uuaaguuug ac  uuuguuguccugaguucguaaagcg uu guggaguacaaa  ggaaa uuuuau auuuaaaaaca   cga c aaaucuacu ccauaa uucac        a  ucc  a
a         a  ag                         -  c            ga     c      a           aua   c -         u      -     -------- gu   ua
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Genome context
Coordinates (Mt3.0) Overlapping transcripts
MtChr5: 19410202-19410450 [+]
intergenic
Clustered miRNAs
< 10kb from mtr-MIR2592j
mtr-MIR1510b MtChr5: 19401653-19401888 [+]
mtr-MIR1510a MtChr5: 19405593-19405756 [+]
mtr-MIR2592j MtChr5: 19410202-19410450 [+]
mtr-MIR2089 MtChr5: 19418730-19418892 [+]

Mature sequence mtr-miR2592j

Accession MIMAT0013274
Sequence

213 -  

aaaugcuugaguccuguuguu

 - 233

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Evidence experimental; 454 [1]

References

1
PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).