Stem-loop sequence dps-mir-2539

Accession MI0011674
Description Drosophila pseudoobscura miR-2539 stem-loop
Stem-loop
    guuuuccc     ug c   a              uu         -   a 
cacu        cugau  a ggu gugaauggucaugu  cuguauugg ugu u
||||        |||||  | ||| ||||||||||||||  ||||||||| ||| u
guga        gacua  u uca cacuuauuaguacg  gacauaacc aua c
    aauuauac     gu -   a              cc         u   g 
Get sequence
Genome context
Coordinates (dpse_r2.26_FB2012_01) Overlapping transcripts
XL_group1e: 8366678-8366788 [-]
intergenic
Clustered miRNAs
< 10kb from dps-mir-2539
dps-mir-2524 XL_group1e: 8377507-8377599 [-]
dps-mir-2524 XL_group1e: 8376659-8376751 [-]
dps-mir-2543a-2 XL_group1e: 8373978-8374093 [-]
dps-mir-2542-1 XL_group1e: 8373614-8373698 [-]
dps-mir-2541 XL_group1e: 8367679-8367786 [-]
dps-mir-2540 XL_group1e: 8367333-8367441 [-]
dps-mir-2523 XL_group1e: 8366995-8367108 [-]
dps-mir-2539 XL_group1e: 8366678-8366788 [-]
dps-mir-2522a XL_group1e: 8365900-8366011 [-]
dps-mir-2522b XL_group1e: 8363413-8363514 [-]
dps-mir-2538 XL_group1e: 8363244-8363359 [-]
dps-mir-2521 XL_group1e: 8362756-8362842 [-]
dps-mir-2520 XL_group1e: 8362599-8362718 [-]
dps-mir-2537 XL_group1e: 8362508-8362587 [-]
dps-mir-2536 XL_group1e: 8362342-8362452 [-]

Mature sequence dps-miR-2539-5p

Accession MIMAT0012334
Previous IDs dps-miR-2539
Sequence

29 - 

aauggucauguuucuguauug

 - 49

Get sequence
Evidence experimental; Solexa [1]

Mature sequence dps-miR-2539-3p

Accession MIMAT0012335
Previous IDs dps-miR-2539*
Sequence

65 - 

aauacagccgcaugauuauuca

 - 86

Get sequence
Evidence experimental; Solexa [1]

References

1
PMID:20037610 "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila" Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC Nat Genet. 42:6-9(2010).