Stem-loop sequence dps-mir-2538

AccessionMI0011672 (change log)
DescriptionDrosophila pseudoobscura miR-2538 stem-loop
Stem-loop
   -     -cu   uua     -       a     ug     a    aa      uauau 
5'  gaaca   guu   ugcgg uugaagu guagg  gaaga cuaa  uauuug     u
    |||||   |||   ||||| ||||||| |||||  ||||| ||||  ||||||      
3'  uuugu   cag   acgcu agcuuca cgucc  cuuuu gauu  auaagu     u
   a     ccc   -ca     u       a     gu     a    aa      uaacu 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (dpse_r2.26_FB2012_01) Overlapping transcripts
XL_group1e: 8363244-8363359 [-]
intergenic
Clustered miRNAs
< 10kb from dps-mir-2538
dps-mir-2541XL_group1e: 8367679-8367786 [-]
dps-mir-2540XL_group1e: 8367333-8367441 [-]
dps-mir-2523XL_group1e: 8366995-8367108 [-]
dps-mir-2539XL_group1e: 8366678-8366788 [-]
dps-mir-2522aXL_group1e: 8365900-8366011 [-]
dps-mir-2522bXL_group1e: 8363413-8363514 [-]
dps-mir-2538XL_group1e: 8363244-8363359 [-]
dps-mir-2521XL_group1e: 8362756-8362842 [-]
dps-mir-2520XL_group1e: 8362599-8362718 [-]
dps-mir-2537XL_group1e: 8362508-8362587 [-]
dps-mir-2536XL_group1e: 8362342-8362452 [-]
Database links

Mature sequence dps-miR-2538-5p

Accession MIMAT0012330
Previous IDsdps-miR-2538
Sequence

28 - 

uagguggaagaacuaaaauauu

 - 49

Get sequence
Evidence experimental; Illumina [1]

Mature sequence dps-miR-2538-3p

Accession MIMAT0012331
Previous IDsdps-miR-2538*
Sequence

68 - 

uaaauuagauuuucugccugca

 - 89

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:20037610 "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila" Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC Nat Genet. 42:6-9(2010).