Stem-loop sequence dme-mir-2279

Accession MI0011289
Description Drosophila melanogaster miR-2279 stem-loop
Stem-loop 
-   gagagg      aaa     -uu     u         g            u  a 
 cgg      auuaug   gacaa   ugaaa uaaauaucu ugugugaaauua uu a
 |||      ||||||   |||||   ||||| ||||||||| |||||||||||| ||  
 gcc      uaauau   cuguu   auuuu auuuauaga gcgcacuuuaau ag a
g   ----aa      -cc     uac     u         a            u  a
Get sequence
Deep sequencing
447 reads, 44 experiments
Genome context
Coordinates (BDGP5.0) Overlapping transcripts
2RHet: 1322833-1322945 [-]
sense
FBtr0301779 ; CG40263-RF; intron 2
FBtr0301779 ; CG40263-RF; intron 2
FBtr0301779 ; CG40263-RF; intron 2
FBtr0301781 ; CG40263-RH; intron 3
FBtr0301780 ; CG40263-RG; intron 3
FBtr0301781 ; CG40263-RH; intron 3
FBtr0301780 ; CG40263-RG; intron 3
FBtr0301781 ; CG40263-RH; intron 3
FBtr0301780 ; CG40263-RG; intron 3

Mature sequence dme-miR-2279-5p

Accession MIMAT0011784
Previous IDs dme-miR-2279*
Sequence

31 -  

uuaaauaucugugugugaaauu

 - 52

Get sequence
Deep sequencing 297 reads, 41 experiments
Evidence experimental; 454 [1], Solexa [2]
Predicted targets

Mature sequence dme-miR-2279-3p

Accession MIMAT0011785
Previous IDs dme-miR-2279
Sequence

67 -  

uuucacgcgaagauauuuauuu

 - 88

Get sequence
Deep sequencing 70 reads, 16 experiments
Evidence experimental; 454 [1], Solexa [2]
Predicted targets

References

1
PMID:19541914 "Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line" Lau NC, Robine N, Martin R, Chung WJ, Niki Y, Berezikov E, Lai EC Genome Res. 19:1776-1785(2009).
2
PMID:20037610 "Evolutionary flux of canonical microRNAs and mirtrons in Drosophila" Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC Nat Genet. 42:6-9(2010).