Stem-loop sequence hsa-mir-2276

Accession

MI0011282 (change log)

Symbol

HGNC:MIR2276

Description

Homo sapiens miR-2276 stem-loop

Literature search

2 open access papers mention hsa-mir-2276
(2 sentences)

Stem-loop

       -u  u   g   g -      u   c         gcu   u 
5' gugu  cu cca ucc c ccucug cac uugcagacg   uuc c
   ||||  || ||| ||| | |||||| ||| |||||||||   ||| u
3' uacg  ga ggu agg g ggagac gug aacgucugu   aag c
       uc  c   g   a c      u   -         ---   c 

Deep sequencing

266 reads, 0 reads per million, 65 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr13: 24162416-24162504 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000044159 ; TNFRSF19-004; intron 1

  OTTHUMT00000044156 ; TNFRSF19-001; intron 1

  OTTHUMT00000044157 ; TNFRSF19-002; intron 1

  OTTHUMT00000044158 ; TNFRSF19-003; intron 2

  ENST00000248484 ; TNFRSF19-004; intron 1

  ENST00000382258 ; TNFRSF19-001; intron 1

  ENST00000382263 ; TNFRSF19-002; intron 1

  ENST00000403372 ; TNFRSF19-201; intron 1

  ENST00000464735 ; TNFRSF19-003; intron 2

Database links

• EntrezGene:MIR2276
• HGNC:MIR2276
• miRBase Tracker:MI0011282

Mature sequence hsa-miR-2276-5p

• Accession: MIMAT0026921
• Sequence: 16 - gcccucugucaccuugcagacg - 37
• Deep sequencing: 61 reads, 30 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:hsa-miR-2276-5p
  • miRDB:hsa-miR-2276-5p

Mature sequence hsa-miR-2276-3p

• Accession: MIMAT0011775
• Sequence: 54 - ucugcaagugucagaggcgagg - 75
• Deep sequencing: 204 reads, 53 experiments
• Evidence: experimental; 454 [1], Illumina [2]
• Predicted targets:
  • TargetScanVert:hsa-miR-2276-3p
  • miRDB:hsa-miR-2276-3p
  • microrna.org:hsa-miR-2276-3p

References

1. PMID:19508715 "Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing" Nygaard S, Jacobsen A, Lindow M, Eriksen J, Balslev E, Flyger H, Tolstrup N, Moller S, Krogh A, Litman T BMC Med Genomics. 2:35(2009).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).