Stem-loop sequence osa-MIR2118l

Accession MI0011262
Description Oryza sativa miR2118l stem-loop
Gene family MIPF0000745; MIR2118
Stem-loop 
   g  uu            aaauu          g              -  a     a       cu    uauuuucu        aga 
agc ag  aggaagaggaag     gagugucuaa aacagugggaaugg aa cauua ggaaagc  acag        ucuccacu   a
||| ||  ||||||||||||     |||||||||| |||||||||||||| || ||||| |||||||  ||||        ||||||||   u
ucg uu  uccuucuccuuc     cucauagauu uuguuauccuuacc uu guaau ccuuuug  uguu        agaggugg   u
   g  -u            -----          g              c  c     -       --    uucuuaau        gga
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Genome context
Coordinates (MSU7) Overlapping transcripts
Chr4: 21656708-21656884 [-]
intergenic
Clustered miRNAs
< 10kb from osa-MIR2118l
osa-MIR2118n Chr4: 21661494-21661672 [-]
osa-MIR2118o Chr4: 21661272-21661426 [-]
osa-MIR2118m Chr4: 21658851-21659020 [-]
osa-MIR2118k Chr4: 21656944-21657120 [-]
osa-MIR2118l Chr4: 21656708-21656884 [-]
osa-MIR2118j Chr4: 21654594-21654764 [-]
osa-MIR2118h Chr4: 21652652-21652808 [-]
osa-MIR2118i Chr4: 21652388-21652568 [-]
osa-MIR2118f Chr4: 21650514-21650682 [-]
osa-MIR5522 Chr4: 21650324-21650436 [+]
osa-MIR2118g Chr4: 21650301-21650460 [-]
osa-MIR2118c Chr4: 21647968-21648064 [-]
osa-MIR2118d Chr4: 21647689-21647864 [-]
osa-MIR2118e Chr4: 21647428-21647604 [-]

Mature sequence osa-miR2118l

Accession MIMAT0011751
Sequence

121 -  

uuccuaaugcuucccauuccua

 - 142

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Evidence experimental; 454 [1]

References

1
PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice" Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH Genome Res. 19:1429-1440(2009).