Stem-loop sequence ppc-mir-2241a-2

Accession MI0011247
Description Pristionchus pacificus miR-2241a-2 stem-loop
Gene family MIPF0000821; mir-2241
Stem-loop 
-      uac   u        c    uc   guc      -   a 
 auucga   gcc cugaucuu agga  ccu   ugaaca ucg a
 ||||||   ||| |||||||| ||||  |||   |||||| |||  
 uaagcu   cgg gacuagaa uccu  gga   gcuugu agu a
c      --c   -        c    ua   -ac      g   u
Get sequence
Deep sequencing
14 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Ppa_Contig25: 40539-40626 [+]
intergenic
Clustered miRNAs
< 10kb from ppc-mir-2241a-2
ppc-mir-2241a-3 Ppa_Contig25: 39974-40091 [+]
ppc-mir-2241b-1 Ppa_Contig25: 40120-40216 [+]
ppc-mir-2241a-4 Ppa_Contig25: 40258-40354 [+]
ppc-mir-2241b-3 Ppa_Contig25: 40396-40492 [+]
ppc-mir-2241a-2 Ppa_Contig25: 40539-40626 [+]

Mature sequence ppc-miR-2241a

Accession MIMAT0011731
Sequence

54 -  

uucgcaaggauuccucaagauc

 - 75

Get sequence
Deep sequencing 35 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).