Stem-loop sequence ppc-mir-2241a-1

Accession MI0011246
Description Pristionchus pacificus miR-2241a-1 stem-loop
Gene family MIPF0000821; mir-2241
Stem-loop 
-      uac   u        c    uc   guc       -  a 
 auucga   gcc cugaucuu agga  ccu   ugaacac cg a
 ||||||   ||| |||||||| ||||  |||   ||||||| ||  
 uaagcu   cgg gacuagaa uccu  gga   gcuugug gu a
c      --c   -        c    ua   -ac       a  u
Get sequence
Deep sequencing
14 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Ppa_Contig51: 325988-326075 [-]
intergenic
Clustered miRNAs
< 10kb from ppc-mir-2241a-1
ppc-mir-2241b-2 Ppa_Contig51: 326529-326625 [-]
ppc-mir-2241c Ppa_Contig51: 326391-326487 [-]
ppc-mir-2241a-5 Ppa_Contig51: 326119-326206 [-]
ppc-mir-2241a-1 Ppa_Contig51: 325988-326075 [-]

Mature sequence ppc-miR-2241a

Accession MIMAT0011731
Sequence

54 -  

uucgcaaggauuccucaagauc

 - 75

Get sequence
Deep sequencing 35 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).