Stem-loop sequence ppc-mir-2242-2

Accession MI0011211
Description Pristionchus pacificus miR-2242-2 stem-loop
Gene family MIPF0000945; mir-2242
Stem-loop 
   g   -   a  --u    aacuuugua   -uc  c        a               a 
caa uga cau gc   gaug         gug   cu acucgcuc uuucauuccgacaca g
||| ||| ||| ||   ||||         |||   || |||||||| ||||||||||||||| a
guu acu gug ug   cugc         cac   ga ugagugag aaaguaagguugugu a
   g   u   a  uuu    ---------   uac  c        c               a
Get sequence
Deep sequencing
7 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Ppa_Contig76: 643780-643897 [+]
intergenic
Clustered miRNAs
< 10kb from ppc-mir-2242-2
ppc-mir-2242-1 Ppa_Contig76: 643510-643627 [+]
ppc-mir-2242-2 Ppa_Contig76: 643780-643897 [+]

Mature sequence ppc-miR-2242

Accession MIMAT0011707
Sequence

69 -  

uuggaaugaaacgagugagucagc

 - 92

Get sequence
Deep sequencing 14 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).