Stem-loop sequence ppc-mir-2235-8

Accession

MI0011181

Description

Pristionchus pacificus miR-2235-8 stem-loop

Gene family

MIPF0000825; mir-2235

Stem-loop

-     cucuu     c    u    a  g     uu    -  aa 
 guccg     gcccg ucau caau uu ccggu  gaac ga  u
 |||||     ||||| |||| |||| || |||||  |||| ||   
 caggc     cgggc agua guua ga ggcca  cuug cu  u
c     ---uu     u    u    c  g     --    a  ag 

Deep sequencing

6 reads, 1 experiments

Genome context

• Coordinates (WS200): Ppa_Contig184: 58863-58949 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppc-mir-2235-8

• ppc-mir-2235-8: Ppa_Contig184: 58863-58949 [-]
• ppc-mir-2235-7: Ppa_Contig184: 58637-58726 [-]
• ppc-mir-2235-6: Ppa_Contig184: 58412-58501 [-]
• ppc-mir-2235-5: Ppa_Contig184: 57887-57976 [-]
• ppc-mir-2235-4: Ppa_Contig184: 57663-57752 [-]
• ppc-mir-2235-3: Ppa_Contig184: 57439-57528 [-]
• ppc-mir-2235-2: Ppa_Contig184: 57215-57304 [-]
• ppc-mir-2235-1: Ppa_Contig184: 56991-57080 [-]

Mature sequence ppc-miR-2235

• Accession: MIMAT0011681
• Sequence: 54 - ucaccgggagcauuguaugauc - 75
• Deep sequencing: 48 reads, 1 experiments
• Evidence: experimental; 454 [1]

References

1. PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).