Stem-loop sequence ppc-mir-63f

Accession MI0011157
Description Pristionchus pacificus miR-63f stem-loop
Gene family MIPF0000823; mir-63
Stem-loop 
c     ---cu    ccu            -    -g   u       -  uuc 
 agagc     ucca   gggguuccauuc guau  agu ucaugga cu   c
 |||||     ||||   |||||||||||| ||||  ||| ||||||| ||    
 ucuug     aggu   ccccaaggugag cgug  uca aguaucu ga   c
-     auaau    -au            g    ag   c       c  cau
Get sequence
Deep sequencing
2 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Ppa_Contig21: 1203841-1203942 [+]
intergenic
Clustered miRNAs
< 10kb from ppc-mir-63f
ppc-mir-63b Ppa_Contig21: 1203087-1203203 [+]
ppc-mir-63c-1 Ppa_Contig21: 1203247-1203349 [+]
ppc-mir-63c-2 Ppa_Contig21: 1203389-1203504 [+]
ppc-mir-63c-3 Ppa_Contig21: 1203538-1203653 [+]
ppc-mir-63c-4 Ppa_Contig21: 1203687-1203802 [+]
ppc-mir-63f Ppa_Contig21: 1203841-1203942 [+]

Mature sequence ppc-miR-63f

Accession MIMAT0011664
Sequence

59 -  

uaugacacugagugcggagugg

 - 80

Get sequence
Deep sequencing 2 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).