Stem-loop sequence ppc-mir-63c-3

Accession MI0011141
Description Pristionchus pacificus miR-63c-3 stem-loop
Gene family MIPF0000823; mir-63
Stem-loop 
      c a    -uaa     g           -      -    u       c  gau 
gguacc g acca    uccau ugggguuccau ucgcau gagu ucaugga uc   u
|||||| | ||||    ||||| ||||||||||| |||||| |||| ||||||| ||    
ccaugg c uggu    aggug gcuccagggua agcgua cuca aguaucu ag   c
      - a    uacc     -           g      a    c       -  aua
Get sequence
Deep sequencing
118 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Ppa_Contig21: 1203538-1203653 [+]
intergenic
Clustered miRNAs
< 10kb from ppc-mir-63c-3
ppc-mir-63b Ppa_Contig21: 1203087-1203203 [+]
ppc-mir-63c-1 Ppa_Contig21: 1203247-1203349 [+]
ppc-mir-63c-2 Ppa_Contig21: 1203389-1203504 [+]
ppc-mir-63c-3 Ppa_Contig21: 1203538-1203653 [+]
ppc-mir-63c-4 Ppa_Contig21: 1203687-1203802 [+]
ppc-mir-63f Ppa_Contig21: 1203841-1203942 [+]

Mature sequence ppc-miR-63c

Accession MIMAT0011651
Sequence

67 -  

uaugacacucaaugcgagauggg

 - 89

Get sequence
Deep sequencing 472 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).