Stem-loop sequence crm-mir-239a

Accession MI0011113
Description Caenorhabditis remanei miR-239a stem-loop
Gene family MIPF0000135; mir-239
Stem-loop 
-      a  uu               cac      a     c  uga 
 aaucca ga  gcgauuuuuguacua   auaggu cugga ac   g
 |||||| ||  |||||||||||||||   |||||| ||||| ||    
 uuaggu cu  cguuaaaaacgugau   uaucua gaccu ug   a
c      -  --               -cu      a     a  uuu
Get sequence
Deep sequencing
53 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Crem_Contig93: 351743-351835 [-]
intergenic
Clustered miRNAs
< 10kb from crm-mir-239a
crm-mir-239b Crem_Contig93: 352923-353018 [+]
crm-mir-239a Crem_Contig93: 351743-351835 [-]

Mature sequence crm-miR-239a-5p

Accession MIMAT0011616
Previous IDs crm-miR-239a
Sequence

18 -  

uuuguacuacacauagguacugg

 - 40

Get sequence
Deep sequencing 51 reads, 1 experiments
Evidence experimental; 454 [1]

Mature sequence crm-miR-239a-3p

Accession MIMAT0011617
Previous IDs crm-miR-239a*
Sequence

58 -  

cagaaucuauucuagugc

 - 75

Get sequence
Deep sequencing 2 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).