Stem-loop sequence crm-mir-35c-3

Accession MI0011111
Description Caenorhabditis remanei miR-35c-3 stem-loop
Gene family MIPF0000096; mir-36
Stem-loop 
-     c           -  a        a   u        uu  ua 
 ucggu ggaucggaccu cc cugguuuu gcu cggugaua  uc  g
 ||||| ||||||||||| || |||||||| ||| ||||||||  ||   
 agcua ccuagccugga gg gacuaaaa ugg gccacuau  ag  a
u     c           c  -        g   -        -u  ua
Get sequence
Deep sequencing
24 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Crem_Contig93: 223069-223163 [-]
intergenic
Clustered miRNAs
< 10kb from crm-mir-35c-3
crm-mir-35c-2 Crem_Contig93: 223885-224001 [-]
crm-mir-35e-2 Crem_Contig93: 223699-223796 [-]
crm-mir-35d-2 Crem_Contig93: 223544-223635 [-]
crm-mir-35f Crem_Contig93: 223206-223319 [-]
crm-mir-35c-3 Crem_Contig93: 223069-223163 [-]
crm-mir-35e-1 Crem_Contig93: 222856-222943 [-]
crm-mir-35d-1 Crem_Contig93: 222710-222800 [-]
crm-mir-35g Crem_Contig93: 222433-222546 [-]
crm-mir-35c-1 Crem_Contig93: 222297-222390 [-]
crm-mir-35a-2 Crem_Contig93: 221979-222067 [-]
crm-mir-35b Crem_Contig93: 221703-221796 [-]
crm-mir-35a-1 Crem_Contig93: 221595-221680 [-]

Mature sequence crm-miR-35c-5p

Accession MIMAT0011613
Previous IDs crm-miR-35c*
Sequence

19 -  

cacugguuuuagcuucggug

 - 38

Get sequence
Deep sequencing 1 reads, 1 experiments
Evidence experimental; 454 [1]

Mature sequence crm-miR-35c-3p

Accession MIMAT0011512
Previous IDs crm-miR-35c
Sequence

57 -  

ucaccgggugaaaaucagggc

 - 77

Get sequence
Deep sequencing 69 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).