Stem-loop sequence crm-mir-38

Accession MI0011099
Description Caenorhabditis remanei miR-38 stem-loop
Gene family MIPF0000096; mir-36
Stem-loop 
-      ug  ugaaa   - -    a             a     g        ugacacau 
 uccgau  gu     gag c caga ccuauaccgguuu acuuc uggugaua        a
 ||||||  ||     ||| | |||| ||||||||||||| ||||| ||||||||        u
 agguua  cg     cuc g gucu ggauauggucaaa ugagg gccacuau        u
a      gu  -----   a c    a             a     -        uucuuaca
Get sequence
Deep sequencing
2 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Crem_Contig1: 1740947-1741066 [-]
intergenic
Clustered miRNAs
< 10kb from crm-mir-38
crm-mir-38 Crem_Contig1: 1740947-1741066 [-]
crm-mir-39 Crem_Contig1: 1740785-1740878 [-]
crm-mir-40 Crem_Contig1: 1740683-1740782 [-]
crm-mir-41 Crem_Contig1: 1740555-1740672 [-]

Mature sequence crm-miR-38

Accession MIMAT0011603
Sequence

74 -  

ucaccgggaguaaaacugguau

 - 95

Get sequence
Deep sequencing 2 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).