Stem-loop sequence crm-mir-43

Accession MI0011051
Description Caenorhabditis remanei miR-43 stem-loop
Gene family MIPF0000234; mir-43
Stem-loop 
-  gc   u     c      a    -     u     u   -   agaga 
 ag  gau cugcc gugaca caag aaacu gugau aug ccu     a
 ||  ||| ||||| |||||| |||| ||||| ||||| ||| |||     u
 uc  cug ggcgg cgcugu guuc uuuga cacua uac ggg     g
g  ua   u     a      c    a     -     -   a   aagaa
Get sequence
Deep sequencing
9 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Crem_Contig1: 1324406-1324505 [+]
intergenic
Clustered miRNAs
< 10kb from crm-mir-43
crm-mir-45 Crem_Contig1: 1319070-1319178 [-]
crm-mir-42 Crem_Contig1: 1324268-1324371 [+]
crm-mir-43 Crem_Contig1: 1324406-1324505 [+]
crm-mir-44 Crem_Contig1: 1324559-1324656 [+]

Mature sequence crm-miR-43

Accession MIMAT0011533
Sequence

63 -  

uaucacaguuuacuugcugucgc

 - 85

Get sequence
Deep sequencing 9 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).