Stem-loop sequence crm-mir-39

Accession MI0011021
Description Caenorhabditis remanei miR-39 stem-loop
Gene family MIPF0000304; mir-39
Stem-loop 
u     -     -     c     u   uuuc      a   aa uuc 
 gagau ccaga gagcc aacug uuc    cccggu aua  c   a
 ||||| ||||| ||||| ||||| |||    |||||| |||  |    
 uucua ggucu cucgg uugac aag    gggcca uau  g   a
-     u     u     a     u   -uau      c   ca cac
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Deep sequencing
reads, experiments
Genome context
Coordinates (WS200) Overlapping transcripts
Crem_Contig1: 1740785-1740878 [-]
intergenic
Clustered miRNAs
< 10kb from crm-mir-39
crm-mir-38 Crem_Contig1: 1740947-1741066 [-]
crm-mir-39 Crem_Contig1: 1740785-1740878 [-]
crm-mir-40 Crem_Contig1: 1740683-1740782 [-]
crm-mir-41 Crem_Contig1: 1740555-1740672 [-]

Mature sequence crm-miR-39

Accession MIMAT0011506
Sequence

57 -  

ucaccggguaugaaucaguuag

 - 78

Get sequence
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).