Stem-loop sequence cbr-mir-54c

Accession MI0011013
Description Caenorhabditis briggsae miR-54c stem-loop
Gene family MIPF0000874; mir-54
Stem-loop 
cguga c          -c     c     uauc  u  ua     caaa 
     g cgauccuuga  uggaa uugga    gu cg  uacag    a
     | ||||||||||  ||||| |||||    || ||  |||||     
     c gcuaggaacu  accuu aaccu    ca gc  auguc    u
--gug u          aa     c     ---u  u  cc     cuga
Get sequence
Deep sequencing
322 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
chrX: 16837432-16837527 [-]
intergenic
Clustered miRNAs
< 10kb from cbr-mir-54c
cbr-mir-54d chrX: 16837573-16837686 [-]
cbr-mir-54c chrX: 16837432-16837527 [-]
cbr-mir-54a chrX: 16837257-16837374 [-]
cbr-mir-54b chrX: 16837100-16837211 [-]
cbr-mir-55 chrX: 16836967-16837078 [-]
cbr-mir-56 chrX: 16836837-16836952 [-]

Mature sequence cbr-miR-54c

Accession MIMAT0011495
Sequence

59 -  

uacccguacuuccaacuucc

 - 78

Get sequence
Deep sequencing 322 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).