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Stem-loop sequence MI0011012

Accession MI0011012
ID cbr-mir-54b
Description Caenorhabditis briggsae miR-54b stem-loop
Stem-loop 
      -------   c     u         -  c    c    uuuu     cga  u 
gagcac       gag ugauc uugacucga ac ugga aucg    guaca   ag c
||||||       ||| ||||| ||||||||| || |||| ||||    |||||   || a
uucgug       uuc gcuag aacugagcu ug accu uagu    caugu   uc a
      uaaaaau   c     c         a  u    -    -gcc     -cg  g
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Genome context
Coordinates (WS200) Overlapping transcripts
X: 16837100-16837211 [-]
intergenic
Clustered miRNAs
< 10kb from cbr-mir-54b
cbr-mir-54d X: 16837573-16837686 [-]
cbr-mir-54c X: 16837432-16837527 [-]
cbr-mir-54a X: 16837257-16837374 [-]
cbr-mir-54b X: 16837100-16837211 [-]
cbr-mir-55 X: 16836967-16837078 [-]
cbr-mir-56 X: 16836837-16836952 [-]

Mature sequence MIMAT0011494

Accession MIMAT0011494
ID cbr-miR-54b
Sequence

63 -  

uacccgugauuccauguaucgag

 - 85

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Evidence experimental; 454 [1]
Predicted targets

References

1
"Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).