Stem-loop sequence cbr-mir-54b

Accession MI0011012
Description Caenorhabditis briggsae miR-54b stem-loop
Stem-loop 
      -------   c     u         -  c    c    uuuu     cga  u 
gagcac       gag ugauc uugacucga ac ugga aucg    guaca   ag c
||||||       ||| ||||| ||||||||| || |||| ||||    |||||   || a
uucgug       uuc gcuag aacugagcu ug accu uagu    caugu   uc a
      uaaaaau   c     c         a  u    -    -gcc     -cg  g
Get sequence
Deep sequencing
78 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
chrX: 16837100-16837211 [-]
intergenic
Clustered miRNAs
< 10kb from cbr-mir-54b
cbr-mir-54d chrX: 16837573-16837686 [-]
cbr-mir-54c chrX: 16837432-16837527 [-]
cbr-mir-54a chrX: 16837257-16837374 [-]
cbr-mir-54b chrX: 16837100-16837211 [-]
cbr-mir-55 chrX: 16836967-16837078 [-]
cbr-mir-56 chrX: 16836837-16836952 [-]

Mature sequence cbr-miR-54b

Accession MIMAT0011494
Sequence

63 -  

uacccgugauuccauguaucgag

 - 85

Get sequence
Deep sequencing 78 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).