Stem-loop sequence cbr-mir-64b

Accession MI0011008
Description Caenorhabditis briggsae miR-64b stem-loop
Stem-loop 
   guuauucuuu    aggc      uuc    a   cca    u       au   ag 
ucc          ccga    cccgcc   caug cac   agcg gucugga  gac  a
|||          ||||    ||||||   |||| |||   |||| |||||||  |||   
agg          gguu    gggcgg   guac gug   ucgc caggccu  cug  a
   -aaaaucccu    --ga      caa    g   uag    -       -c   gu
Get sequence
Deep sequencing
8 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
chrIII: 218778-218894 [-]
intergenic
Clustered miRNAs
< 10kb from cbr-mir-64b
cbr-mir-2226 chrIII: 219144-219242 [-]
cbr-mir-64a chrIII: 218903-219012 [-]
cbr-mir-64b chrIII: 218778-218894 [-]
cbr-mir-65 chrIII: 218506-218602 [-]

Mature sequence cbr-miR-64b

Accession MIMAT0011490
Sequence

71 -  

cggaccgcugauguggcaug

 - 90

Get sequence
Deep sequencing 8 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).