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Stem-loop sequence MI0011006

Accession MI0011006
ID cbr-mir-41b
Description Caenorhabditis briggsae miR-41b stem-loop
Stem-loop 
  -     u    g          u        gua      caaaacca 
gc ggauc cucu gccuuggagg uucucauc   gugaua        a
|| ||||| |||| |||||||||| ||||||||   ||||||        a
cg ccuag gagg uggaaccuuc aagagugg   cacuau        a
  u     -    a          u        -gc      agcauacc
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Genome context
Coordinates (WS200) Overlapping transcripts
II: 7536263-7536362 [+]
intergenic
Clustered miRNAs
< 10kb from cbr-mir-41b
cbr-mir-36 II: 7535762-7535868 [+]
cbr-mir-38 II: 7535859-7535973 [+]
cbr-mir-39 II: 7536036-7536148 [+]
cbr-mir-40 II: 7536135-7536250 [+]
cbr-mir-41b II: 7536263-7536362 [+]
cbr-mir-35d II: 7536385-7536474 [+]
cbr-mir-41 II: 7536494-7536603 [+]
cbr-mir-35 II: 7536620-7536731 [+]
Gene family

MIPF0000096; mir-36

Mature sequence MIMAT0011489

Accession MIMAT0011489
ID cbr-miR-41b
Sequence

63 -  

ucaccgggugagaaucuucc

 - 82

Get sequence
Evidence experimental; 454 [1]
Predicted targets

References

1
"Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).