Stem-loop sequence cbr-mir-35b-10

Accession MI0010998
Description Caenorhabditis briggsae miR-35b-10 stem-loop
Gene family MIPF0000096; mir-36
Stem-loop 
---c  a - u              cg ug     uc  g        uu   aa 
    ga g g cuggaucggaccuc  c  guuuu  cc cggugaua  ccg  g
    || | | ||||||||||||||  |  |||||  || ||||||||  |||  c
    cu c c gaccuagccuggag  g  caaaa  gg gccacuau  ggu  a
gcua  a a u              au gu     gu  -        -u   ga
Get sequence
Deep sequencing
142 reads, 1 experiments
Genome context
Coordinates (WS200) Overlapping transcripts
chrX: 15336052-15336158 [+]
intergenic
Clustered miRNAs
< 10kb from cbr-mir-35b-10
cbr-mir-35c-1 chrX: 15333569-15333682 [+]
cbr-mir-35b-1 chrX: 15333880-15333968 [+]
cbr-mir-35e chrX: 15334006-15334122 [+]
cbr-mir-35b-2 chrX: 15334766-15334868 [+]
cbr-mir-35b-3 chrX: 15334941-15335040 [+]
cbr-mir-35b-4 chrX: 15335080-15335182 [+]
cbr-mir-35b-5 chrX: 15335266-15335382 [+]
cbr-mir-35b-6 chrX: 15335427-15335519 [+]
cbr-mir-35b-7 chrX: 15335590-15335689 [+]
cbr-mir-35b-8 chrX: 15335737-15335843 [+]
cbr-mir-35b-9 chrX: 15335905-15336004 [+]
cbr-mir-35b-10 chrX: 15336052-15336158 [+]
cbr-mir-35b-11 chrX: 15336203-15336311 [+]
cbr-mir-35b-12 chrX: 15336370-15336473 [+]
cbr-mir-35b-13 chrX: 15336518-15336605 [+]
cbr-mir-35c-2 chrX: 15337746-15337830 [+]

Mature sequence cbr-miR-35b

Accession MIMAT0011483
Sequence

63 -  

ucaccgggugaaaacugguagag

 - 85

Get sequence
Deep sequencing 1704 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).