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Stem-loop sequence MI0010993

Accession MI0010993
ID cbr-mir-35b-5
Description Caenorhabditis briggsae miR-35b-5 stem-loop
Stem-loop 
-    a c  a   ----             cg ug c    u  a        cu   aa 
 auga g gu guu    ugggucggaccuc  c  g uuuu cc cggugaua  cca  g
 |||| | || |||    |||||||||||||  |  | |||| || ||||||||  |||  c
 uacu c ca cag    accuagccuggag  g  c aaag gg gccacuau  ggu  a
u    a -  c   gcuc             au gu a    u  -        -u   ga
Get sequence
Genome context
Coordinates (WS200) Overlapping transcripts
X: 15335266-15335382 [+]
intergenic
Clustered miRNAs
< 10kb from cbr-mir-35b-5
cbr-mir-35c-1 X: 15333569-15333682 [+]
cbr-mir-35b-1 X: 15333880-15333968 [+]
cbr-mir-35e X: 15334006-15334122 [+]
cbr-mir-35b-2 X: 15334766-15334868 [+]
cbr-mir-35b-3 X: 15334941-15335040 [+]
cbr-mir-35b-4 X: 15335080-15335182 [+]
cbr-mir-35b-5 X: 15335266-15335382 [+]
cbr-mir-35b-6 X: 15335427-15335519 [+]
cbr-mir-35b-7 X: 15335590-15335689 [+]
cbr-mir-35b-8 X: 15335737-15335843 [+]
cbr-mir-35b-9 X: 15335905-15336004 [+]
cbr-mir-35b-10 X: 15336052-15336158 [+]
cbr-mir-35b-11 X: 15336203-15336311 [+]
cbr-mir-35b-12 X: 15336370-15336473 [+]
cbr-mir-35b-13 X: 15336518-15336605 [+]
cbr-mir-35c-2 X: 15337746-15337830 [+]
Gene family

MIPF0000096; mir-36

Mature sequence MIMAT0011483

Accession MIMAT0011483
ID cbr-miR-35b
Sequence

68 -  

ucaccgggugaaaacugguagag

 - 90

Get sequence
Evidence experimental; 454 [1]
Predicted targets

References

1
"Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).