Stem-loop sequence MI0010989

Accession

MI0010989

ID

cbr-mir-35b-1

Description

Caenorhabditis briggsae miR-35b-1 stem-loop

Stem-loop

-                 ug    cu   g a      uu   ac 
 uuggaucggaccucugc  guuu  gcc c gugaua  cca  g
 |||||||||||||||||  ||||  ||| | ||||||  |||   
 gaccuagccuggagaug  caaa  ugg g cacuau  ggu  u
a                 gu    ag   - c      -u   ga 

Genome context

• Coordinates (WS200): X: 15333880-15333968 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from cbr-mir-35b-1

• cbr-mir-35c-1: X: 15333569-15333682 [+]
• cbr-mir-35b-1: X: 15333880-15333968 [+]
• cbr-mir-35e: X: 15334006-15334122 [+]
• cbr-mir-35b-2: X: 15334766-15334868 [+]
• cbr-mir-35b-3: X: 15334941-15335040 [+]
• cbr-mir-35b-4: X: 15335080-15335182 [+]
• cbr-mir-35b-5: X: 15335266-15335382 [+]
• cbr-mir-35b-6: X: 15335427-15335519 [+]
• cbr-mir-35b-7: X: 15335590-15335689 [+]
• cbr-mir-35b-8: X: 15335737-15335843 [+]
• cbr-mir-35b-9: X: 15335905-15336004 [+]
• cbr-mir-35b-10: X: 15336052-15336158 [+]
• cbr-mir-35b-11: X: 15336203-15336311 [+]
• cbr-mir-35b-12: X: 15336370-15336473 [+]
• cbr-mir-35b-13: X: 15336518-15336605 [+]
• cbr-mir-35c-2: X: 15337746-15337830 [+]

Gene family

MIPF0000096; mir-36

Mature sequence MIMAT0011483

• Accession: MIMAT0011483
• ID: cbr-miR-35b
• Sequence: 55 - ucaccgggugaaaacugguagag - 77
• Evidence: experimental; 454 [1]
• Predicted targets:
  • MICROCOSM:cbr-miR-35b
  • TARGETSCAN:cbr-miR-35b

References

1. "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).