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Stem-loop sequence MI0010985

Accession MI0010985
ID cbr-mir-54a
Description Caenorhabditis briggsae miR-54a stem-loop
Stem-loop 
     -----     -aa  --            g         caa   u     -c  ua 
cagga     cgucu   gc  cgauccuuggcu ggauaugag   acg guaca  ga  c
|||||     |||||   ||  |||||||||||| |||||||||   ||| |||||  ||  u
guccu     gcgga   cg  gcuaggaaccga ucuauacuc   ugc caugu  cu  u
     ucgug     aaa  cu            g         uua   c     cc  ua
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Genome context
Coordinates (WS200) Overlapping transcripts
X: 16837257-16837374 [-]
intergenic
Clustered miRNAs
< 10kb from cbr-mir-54a
cbr-mir-54d X: 16837573-16837686 [-]
cbr-mir-54c X: 16837432-16837527 [-]
cbr-mir-54a X: 16837257-16837374 [-]
cbr-mir-54b X: 16837100-16837211 [-]
cbr-mir-55 X: 16836967-16837078 [-]
cbr-mir-56 X: 16836837-16836952 [-]
Gene family

MIPF0000874; mir-54

Mature sequence MIMAT0011477

Accession MIMAT0011477
ID cbr-miR-54a
Sequence

26 -  

ugggauaugagcaaacguguac

 - 47

Get sequence
Evidence experimental; 454 [1]
Predicted targets

Minor miR* sequence MIMAT0011478

Accession MIMAT0011478
ID cbr-miR-54a*
Sequence

65 -  

uacccguauucucauaucugagc

 - 87

Get sequence
Evidence experimental; 454 [1]
Predicted targets

References

1
"Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).