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Stem-loop sequence MI0010981

Accession MI0010981
ID cbr-mir-35d
Description Caenorhabditis briggsae miR-35d stem-loop
Stem-loop 
c      -         c         ug  u        uu  aa 
 ccaguu ccggacacu gcagguuuu  cu cggugaua  cg  g
 |||||| ||||||||| |||||||||  || ||||||||  ||   
 ggucaa ggccuguga cguuuaaaa  gg gccacuau  gc  a
-      u         a         gu  -        -u  cg
Get sequence
Genome context
Coordinates (WS200) Overlapping transcripts
II: 7536385-7536474 [+]
intergenic
Clustered miRNAs
< 10kb from cbr-mir-35d
cbr-mir-36 II: 7535762-7535868 [+]
cbr-mir-38 II: 7535859-7535973 [+]
cbr-mir-39 II: 7536036-7536148 [+]
cbr-mir-40 II: 7536135-7536250 [+]
cbr-mir-41b II: 7536263-7536362 [+]
cbr-mir-35d II: 7536385-7536474 [+]
cbr-mir-41 II: 7536494-7536603 [+]
cbr-mir-35 II: 7536620-7536731 [+]
Gene family

MIPF0000302; mir-35

Mature sequence MIMAT0011470

Accession MIMAT0011470
ID cbr-miR-35d
Sequence

55 -  

ucaccgggugaaaauuugcaag

 - 76

Get sequence
Evidence experimental; 454 [1]
Predicted targets

Minor miR* sequence MIMAT0011469

Accession MIMAT0011469
ID cbr-miR-35d*
Sequence

17 -  

cgcagguuuuugcuucggugau

 - 38

Get sequence
Evidence experimental; 454 [1]
Predicted targets

References

1
"Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).