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Stem-loop sequence MI0010980

Accession MI0010980
ID cbr-mir-35c-2
Description Caenorhabditis briggsae miR-35c-2 stem-loop
Stem-loop 
-  c    u    cg   c   c    g        uu  aag 
 ga ucgg ccug  cca uuu cacc cggugaua  cc   c
 || |||| ||||  ||| ||| |||| ||||||||  ||   a
 cu agcc ggac  ggu aaa gugg gccacuau  gg   a
c  -    u    au   u   a    -        -u  caa
Get sequence
Genome context
Coordinates (WS200) Overlapping transcripts
X: 15337746-15337830 [+]
intergenic
Clustered miRNAs
< 10kb from cbr-mir-35c-2
cbr-mir-35c-1 X: 15333569-15333682 [+]
cbr-mir-35b-1 X: 15333880-15333968 [+]
cbr-mir-35e X: 15334006-15334122 [+]
cbr-mir-35b-2 X: 15334766-15334868 [+]
cbr-mir-35b-3 X: 15334941-15335040 [+]
cbr-mir-35b-4 X: 15335080-15335182 [+]
cbr-mir-35b-5 X: 15335266-15335382 [+]
cbr-mir-35b-6 X: 15335427-15335519 [+]
cbr-mir-35b-7 X: 15335590-15335689 [+]
cbr-mir-35b-8 X: 15335737-15335843 [+]
cbr-mir-35b-9 X: 15335905-15336004 [+]
cbr-mir-35b-10 X: 15336052-15336158 [+]
cbr-mir-35b-11 X: 15336203-15336311 [+]
cbr-mir-35b-12 X: 15336370-15336473 [+]
cbr-mir-35b-13 X: 15336518-15336605 [+]
cbr-mir-35c-2 X: 15337746-15337830 [+]
Gene family

MIPF0000096; mir-36

Mature sequence MIMAT0011467

Accession MIMAT0011467
ID cbr-miR-35c
Sequence

54 -  

ucaccgggugaaaauugguac

 - 74

Get sequence
Evidence experimental; 454 [1]
Predicted targets

References

1
"Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).