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Stem-loop sequence MI0010979

Accession MI0010979
ID cbr-mir-35e
Description Caenorhabditis briggsae miR-35e stem-loop
Stem-loop 
-      uu a    - ---ga          c       c ug  g a      uu  gaa 
 uaaucu  g gguc c     gucggaccug ccugauu u  cu c gugaua  uc   c
 ||||||  | |||| |     |||||||||| ||||||| |  || | ||||||  ||   g
 guuagg  c ccag g     cagccuggac ggauuaa a  gg g cacuau  ag   g
c      -- -    u auccc          a       c gu  - c      -u  auc
Get sequence
Genome context
Coordinates (WS200) Overlapping transcripts
X: 15334006-15334122 [+]
intergenic
Clustered miRNAs
< 10kb from cbr-mir-35e
cbr-mir-35c-1 X: 15333569-15333682 [+]
cbr-mir-35b-1 X: 15333880-15333968 [+]
cbr-mir-35e X: 15334006-15334122 [+]
cbr-mir-35b-2 X: 15334766-15334868 [+]
cbr-mir-35b-3 X: 15334941-15335040 [+]
cbr-mir-35b-4 X: 15335080-15335182 [+]
cbr-mir-35b-5 X: 15335266-15335382 [+]
cbr-mir-35b-6 X: 15335427-15335519 [+]
cbr-mir-35b-7 X: 15335590-15335689 [+]
cbr-mir-35b-8 X: 15335737-15335843 [+]
cbr-mir-35b-9 X: 15335905-15336004 [+]
cbr-mir-35b-10 X: 15336052-15336158 [+]
cbr-mir-35b-11 X: 15336203-15336311 [+]
cbr-mir-35b-12 X: 15336370-15336473 [+]
cbr-mir-35b-13 X: 15336518-15336605 [+]
cbr-mir-35c-2 X: 15337746-15337830 [+]
Gene family

MIPF0000096; mir-36

Mature sequence MIMAT0011468

Accession MIMAT0011468
ID cbr-miR-35e
Sequence

69 -  

ucaccgggugacaauuaggac

 - 89

Get sequence
Evidence experimental; 454 [1]
Predicted targets

References

1
"Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).