Stem-loop sequence cel-mir-2216

Accession

MI0010966 (change log)

Description

Caenorhabditis elegans miR-2216 stem-loop

Stem-loop

   --             c          ca 
5'   gcacauuuuaagu gguaggcguc  a
     ||||||||||||| ||||||||||  u
3'   cguguaaaauuca cuauccguag  u
   uc             u          uu 

Deep sequencing

84 reads, 0 reads per million, 12 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrII: 10867116-10867172 [-]
• Overlapping transcripts:

  sense

  M106.4a ; M106.4a; intron 1

  M106.4b ; M106.4b; intron 2

Database links

• RNAcentral:URS000060F22B_6239
• miRBase Tracker:MI0010966

Mature sequence cel-miR-2216-5p

• Accession: MIMAT0011447
• Previous IDs: cel-miR-2216
• Sequence: 1 - gcacauuuuaagucgguaggc - 21
• Deep sequencing: 80 reads, 12 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000238C30_6239
• Predicted targets:
  • TargetScanWorm:cel-miR-2216
  • microrna.org:cel-miR-2216-5p

Mature sequence cel-miR-2216-3p

• Accession: MIMAT0011448
• Previous IDs: cel-miR-2216*
• Sequence: 37 - cuaucuacuuaaaaugugccu - 57
• Deep sequencing: 4 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • microrna.org:cel-miR-2216-3p

References

1. PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).