Stem-loop sequence cel-mir-2212

Accession

MI0010962 (change log)

Description

Caenorhabditis elegans miR-2212 stem-loop

Literature search

1 open access papers mention cel-mir-2212
(1 sentences)

Stem-loop

   --    ag    uag   g      caagc 
5'   uggc  auca   gcu acuuug     a
     ||||  ||||   ||| ||||||     u
3'   accg  uagu   cgg ugaaac     u
   cu    aa    uua   -      auauu 

Deep sequencing

1048 reads, 0 reads per million, 16 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrX: 16207829-16207888 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from cel-mir-2212

• cel-mir-2212: chrX: 16207829-16207888 [+]
• cel-mir-1819: chrX: 16207955-16208035 [+]

Database links

• RNAcentral:URS000035B24B_6239
• miRBase Tracker:MI0010962

Mature sequence cel-miR-2212-5p

• Accession: MIMAT0011439
• Previous IDs: cel-miR-2212
• Sequence: 1 - uggcagaucauaggcugacuuug - 23
• Deep sequencing: 1048 reads, 16 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000040833E_6239
• Predicted targets:
  • TargetScanWorm:cel-miR-2212
  • microrna.org:cel-miR-2212-5p

Mature sequence cel-miR-2212-3p

• Accession: MIMAT0011440
• Previous IDs: cel-miR-2212*
• Sequence: 39 - aaguggcauuugauaagccauc - 60
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • microrna.org:cel-miR-2212-3p

References

1. PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).