Stem-loop sequence cel-mir-2208b

Accession

MI0010957 (change log)

Description

Caenorhabditis elegans miR-2208b stem-loop

Gene family

MIPF0000772; mir-2208

Literature search

1 open access papers mention cel-mir-2208b
(1 sentences)

Stem-loop

   --         cg      a      aucac 
5'   aaguguacc  gaucug uauccu     c
     |||||||||  |||||| ||||||      
3'   uucacaugg  uuagac guagga     a
   ac         uu      -      gaaaa 

Deep sequencing

760 reads, 0 reads per million, 12 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrIV: 1026580-1026640 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from cel-mir-2208b

• cel-mir-2209b: chrIV: 1021303-1021365 [-]
• cel-mir-2208a: chrIV: 1021772-1021832 [+]
• cel-mir-2208b: chrIV: 1026580-1026640 [+]
• cel-mir-2209a: chrIV: 1027101-1027164 [+]
• cel-mir-2209c: chrIV: 1027218-1027281 [+]

Database links

• RNAcentral:URS000031EB95_6239
• miRBase Tracker:MI0010957

Mature sequence cel-miR-2208b-5p

• Accession: MIMAT0011429
• Sequence: 1 - aaguguacccggaucugauaucc - 23
• Deep sequencing: 336 reads, 11 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000419A3F_6239
• Predicted targets:
  • TargetScanWorm:cel-miR-2208b-5p
  • microrna.org:cel-miR-2208b-5p

Mature sequence cel-miR-2208b-3p

• Accession: MIMAT0011430
• Sequence: 40 - augcagauuuugguacacuuca - 61
• Deep sequencing: 422 reads, 12 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000365C18_6239
• Predicted targets:
  • TargetScanWorm:cel-miR-2208b-3p
  • microrna.org:cel-miR-2208b-3p

References

1. PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).