Stem-loop sequence gma-MIR2119

Accession

MI0010697 (change log)

Description

Glycine max miR2119 stem-loop

Gene family

MIPF0000762; MIR2119

Literature search

5 open access papers mention gma-MIR2119
(15 sentences)

Stem-loop

       u          u     aauu         c   a    u           -       uagaaa 
5' auac ucauuuuuua acuuu    uccucuaua cuc cuuu auuggagaaaa aagagaa      a
   |||| |||||||||| |||||    ||||||||| ||| |||| ||||||||||| |||||||      u
3' ugug gguaaaagau ugaaa    aggggaugu gag gaaa uaacuuuuuuu uucucuu      a
       c          u     ----         u   g    c           c       uaggug 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr1: 7214478-7214613 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR2119

• gma-MIR398a: chr1: 7214749-7214864 [-]
• gma-MIR2119: chr1: 7214478-7214613 [-]

Database links

• miRBase Tracker:MI0010697

Mature sequence gma-miR2119

• Accession: MIMAT0011167
• Sequence: 96 - ucaaagggaguuguaggggaa - 116
• Evidence: not experimental

References

1. PMID:19353277 "Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress" Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL Plant Mol Biol. 70:385-401(2009).