Stem-loop sequence hsa-mir-2110

Accession

MI0010629

Symbol

HGNC:MIR2110

Description

Homo sapiens miR-2110 stem-loop

Gene family

MIPF0001399; mir-2110

Stem-loop

       uu       c      --    u  g   u 
caggggu  ggggaaa ggccgc  ugag ga gcg c
|||||||  ||||||| ||||||  |||| || ||| g
guucuca  cuccuuu cuggcg  acuc uu ugu g
       cc       u      cc    u  g   c 

Deep sequencing

367 reads, 29 experiments

Comments

Zhu et al. incorrectly referred to this sequence as mir-1309 in [1]. This sequence is unrelated to MIR1309 in plants.

Genome context

• Coordinates (GRCh37.p5): chr10: 115933864-115933938 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000050451 ; C10orf118-002; 5'UTR (exon 1)

  OTTHUMT00000050452 ; C10orf118-003; 5'UTR (exon 1)

  OTTHUMT00000050455 ; C10orf118-006; 5'UTR (exon 1)

  OTTHUMT00000050451 ; C10orf118-002; 5'UTR (exon 1)

  OTTHUMT00000050452 ; C10orf118-003; 5'UTR (exon 1)

  OTTHUMT00000050455 ; C10orf118-006; 5'UTR (exon 1)

  OTTHUMT00000050451 ; C10orf118-002; 5'UTR (exon 1)

  OTTHUMT00000050452 ; C10orf118-003; 5'UTR (exon 1)

  OTTHUMT00000050455 ; C10orf118-006; 5'UTR (exon 1)

  ENST00000369287 ; C10orf118-006; 5'UTR (exon 1)

  ENST00000369286 ; C10orf118-002; 5'UTR (exon 1)

  ENST00000369285 ; C10orf118-003; 5'UTR (exon 1)

  ENST00000430353 ; C10orf118-201; 5'UTR (exon 1)

  ENST00000369287 ; C10orf118-006; 5'UTR (exon 1)

  ENST00000369286 ; C10orf118-002; 5'UTR (exon 1)

  ENST00000369285 ; C10orf118-003; 5'UTR (exon 1)

  ENST00000430353 ; C10orf118-201; 5'UTR (exon 1)

  ENST00000369287 ; C10orf118-006; 5'UTR (exon 1)

  ENST00000369286 ; C10orf118-002; 5'UTR (exon 1)

  ENST00000369285 ; C10orf118-003; 5'UTR (exon 1)

Database links

• ENTREZGENE: 100302224;MIR2110
• HGNC: 37071;MIR2110

Mature sequence hsa-miR-2110

• Accession: MIMAT0010133
• Sequence: 8 - uuggggaaacggccgcugagug - 29
• Deep sequencing: 361 reads, 27 experiments
• Evidence: experimental; 454 [1]
• Predicted targets:
  • DIANA-MICROT:hsa-miR-2110
  • MICRORNA.ORG:hsa-miR-2110
  • MIRDB:hsa-miR-2110
  • RNA22-HSA:hsa-miR-2110
  • TARGETMINER:hsa-miR-2110

References

1. PMID:19144710 "Identification of novel Epstein-Barr virus microRNA genes from nasopharyngeal carcinomas" Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G J Virol. 83:3333-3341(2009).